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Program of IWGSC Standard & Protocols workshop at PAG 2017

The IWGSC Standards and Protocols workshop at PAG 2017 took place on Tuesday 17 January 2017 from 1:30 to 6:10 pm. The workshop focused on the annotation and curation of the hexaploid bread wheat reference genome sequence.

International Wheat Genome Sequencing Consortium Standards & Protocols Workshop

Plant & Animal Genome XXV

San Diego, CA, USA

Room: Pacific Salon 3

Tuesday 17 January 2017, 1:30 pm to 6:10 pm

Program Details

Organizers: Jane Rogers and Frédéric Choulet

1:30 pm: Introductory remarks

1:35 pm: Xi Wang, Bayer CropScience. Wheat genome structural annotation using a modular and evidence-combined annotation pipeline. ( Abstract ) - ( Slides )

1:55 pm: Frédéric Choulet, INRA GDEC. Challenges of gene and repeat annotation of the wheat genome sequence. ( Abstract ) - ( Slides )

2:15 pm: Manuel Spannagl, Helmholtz Center Munich. Reference gene prediction in the hexaploid bread wheat genome. ( Abstract ) - ( Slides )

2:35 pm: Jemima Brinton, John Innes Centre. Integrating wheat RNA-Seq data into the expVIP gene expression browser with multiple reference genomes. ( Abstract )

2:55 pm: Rudi Appels, Murdoch University. The wheat genome visualised in Apollo: variation in the clarity of defining and naming gene models. ( Abstract ) - ( Slides )

3:15 pm: Pankaj Jaiswal, Oregon State University. High-resolution study of wheat transcriptomes in response to drought and salinity and ontologies. ( Abstract ) - ( Slides )

3:35 pm: Jane Loveland, Wellcome Trust Sanger Institute. Tools for community genome annotation: ZMap and Otter. ( Abstract ) - ( Slides )

3:55 pm: Brian Smith-White, National Center for Biotechnology Information. Genome curation and maintenance at NCBI. ( Abstract ) - ( Slides )

4:15 pm: Michael Alaux, INRA - URGI. The IWGSC Reference Genome Browser, data mining and beyond. ( Abstract ) - ( Slides )

4:35 pm: Etienne Paux, INRA GDEC. H3K27me3, a key player in wheat gene and genome organization and regulation? ( Abstract )

4:55 pm: Discussion