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Physical mapping of the wheat chromosome 5A

Targeted chromosomes

5A
5A
Click on a chromosome to access associated data (when available) at URGI Sequences Repository.

Project team

First nameLast nameEmailInstitutionCountry
Giampiero Valè giampiero.valeSPAMFILTER@entecra.it CREA – Genomics Research Centre Italy
Michele Stanca micheleSPAMFILTER@stanca.it CREA – Genomics Research Centre Italy
Delfina Barabaschi delfina.barabaschiSPAMFILTER@entecra.it CREA – Genomics Research Centre Italy
Andrea Volante andrea.volanteSPAMFILTER@entecra.it CREA – Genomics Research Centre Italy
Paolo Bagnaresi paolo.bagnaresiSPAMFILTER@entecra.it CREA – Genomics Research Centre Italy
Maria Lucia Prazzoli maria.prazzoliSPAMFILTER@fmach.it CREA – Genomics Research Centre Italy
Katia Lacrima katialacrimaSPAMFILTER@gmail.com CREA – Genomics Research Centre Italy
Vania Michelotti vania.michelottiSPAMFILTER@entecra.it CREA – Genomics Research Centre Italy
Francesca Desiderio francesca.desiderioSPAMFILTER@entecra.it CREA – Genomics Research Centre Italy
Luigi Orrù luigi.orruSPAMFILTER@entecra.it CREA – Genomics Research Centre Italy
Federica Magni fmagniSPAMFILTER@igatechnology.com Institute of Applied Genomics, Udine Italy
Simone Scalabrin sscalabrinSPAMFILTER@igatechnology.com Institute of Applied Genomics, Udine Italy
Irena Jurman ijurmanSPAMFILTER@igatechnology.com Institute of Applied Genomics, Udine Italy
Federica Cattonaro fcattonaroSPAMFILTER@igatechnology.com Institute of Applied Genomics, Udine Italy
Michele Morgante michele.morganteSPAMFILTER@uniud.it Institute of Applied Genomics, Udine Italy
Agata Gadaleta agata.gadaletaSPAMFILTER@uniba.it University of Bari Italy
Antonio Blanco antonio.blancoSPAMFILTER@uniba.it University of Bari Italy
Agostino Fricano agostino.fricanoSPAMFILTER@entecra.it Parco Tecnologico Padano, Lodi Italy
Valentina Mazzamurro valentina.mazzamurroSPAMFILTER@unimore.it Department of Life Sciences, University of Modena and Reggio Emilia, Reggio Emilia Italy
AnnaMaria Mastrangelo annamaria.mastrangeloSPAMFILTER@entecra.it CREA – Cereal Research Centre, Foggia Italy

Project collaborators

First nameLast nameEmailInstitutionCountry
Jaroslav Dolezel dolezelSPAMFILTER@ueb.cas.cz IEB Czech Republic
Hana Šimková simkovahSPAMFILTER@ueb.cas.cz IEB Czech Republic
Paola Tononi p.tononiSPAMFILTER@gmail.com Department of Biotechnology, University of Verona Italy
Massimo Delledonne massimo.delledonneSPAMFILTER@univr.it Department of Biotechnology, University of Verona Italy
Zeev Frenkel zvfrenkelSPAMFILTER@gmail.com Institute of Evolution and Department of Evolutionary and Environmental Biology, University of Haifa Israel
Nicola Vitulo nicola.vituloSPAMFILTER@cribi.unipd.it CRIBI Biotechnology Center, University of Padova Italy

Project funding

This project was funded by the Italian Ministry of Agriculture.

Abstract

The project to develop a physical map for each of the arms of chromosome 5A from the reference cultivar Chinese Spring is based on BAC libraries developed for each arm by the lab of J. Dolozel (IEB, Czech Republic) (see CNRGV page ). High information content fluorescent (HICF) fingerprints from 36,155 (5AS) and 39,830 (5AL) BACs were assembled with FPC and LTC. Physical maps based on merging the assemblies and contig anchoring to genetic maps contain, respectively in the minimal tile paths identified for sequencing, 325 (5AS) and 618 (5AL) contigs covering over 100% of the estimated lengths of the chromosome arms.

Publications

  • Delfina Barabaschi, Federica Magni, Andrea Volante, Agata Gadaleta, Hana Šimková, Simone Scalabrin, Maria Lucia Prazzoli, Paolo Bagnaresi, Katia Lacrima, Vania Michelotti, Francesca Desiderio, Luigi Orrù, Valentina Mazzamurro, Agostino Fricano, AnnaMaria Mastrangelo, Paola Tononi, Nicola Vitulo, Irena Jurman, Zeev Frenkel, Federica Cattonaro, Michele Morgante, Antonio Blanco, Jaroslav Doležel, Massimo Delledonne, Antonio M. Stanca, Luigi Cattivelli and Giampiero Valè. Physical Mapping of Bread Wheat Chromosome 5A: An Integrated Approach. The Plant Genome, 8(1) 2015, doi: 10.3835/plantgenome2015.03.0011